PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01262g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 196aa    MW: 22706.6 Da    PI: 7.0776
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01262g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34631552103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Flkk++e+++d++++++isws+++ sfvv+d+++f+ ++Lpk+Fkh+nf+SF+RQLn+Y F+k+++++         weF+++ F
  Niben101Scf01262g00008.1  63 FLKKTFEMVDDPNTDSIISWSNTKASFVVWDPHKFSIDLLPKHFKHNNFSSFIRQLNTYRFRKIDSDR---------WEFANEGF 138
                               9********************999*****************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                               +kgkk+ll +ikr+k++
  Niben101Scf01262g00008.1 139 QKGKKHLLINIKRRKQQ 155
                               **************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.56E-3459152IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.5E-3859152IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5359152IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-186386IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-3163152IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18101113IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340102126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18114126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEQEKMVTDD VINGGLQTVK EEPVLFLDEE DDTITTNNGV DEFSSSILPK PLEGLRDMGP  60
PPFLKKTFEM VDDPNTDSII SWSNTKASFV VWDPHKFSID LLPKHFKHNN FSSFIRQLNT  120
YRFRKIDSDR WEFANEGFQK GKKHLLINIK RRKQQYTHQG SGSAQSWLGS CNKDGIEAEL  180
EKLKKDQNTL KWKSRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-236115227129Heat shock factor protein 1
5d5v_B1e-236115227129Heat shock factor protein 1
5d5v_D1e-236115227129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802448.11e-128PREDICTED: heat stress transcription factor A-2-like
RefseqXP_009802449.11e-128PREDICTED: heat stress transcription factor A-2-like
SwissprotO809826e-61HSFA2_ARATH; Heat stress transcription factor A-2
TrEMBLM1D6702e-91M1D670_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000827524e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-62heat shock transcription factor A2